Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs16893449 | chr4:16415123 | C/T | 3.78E-12 | 472 | 16.02 | 15.95 | 11.5 | KM Plot |
| THCA | rs16899913 | chr6:167577855 | C/T | 0.000213 | 489 | 16.27 | 14.63 | 12.72 | KM Plot |
| THCA | rs16899916 | chr6:167579102 | A/G | 0.000213 | 489 | 16.23 | 14.9 | 12.72 | KM Plot |
| THCA | rs16910169 | chr11:11829799 | A/C | 3.28E-8 | 489 | 16.3 | 14.7 | 25.47 | KM Plot |
| THCA | rs16910211 | chr11:11850985 | T/C | 3.42E-8 | 489 | 16.33 | 14.58 | 25.47 | KM Plot |
| THCA | rs16915013 | chr8:51461010 | C/G | 5.15E-8 | 490 | 16.02 | 15.75 | 10.6 | KM Plot |
| THCA | rs16916619 | chr8:52534990 | C/A | 0 | 479 | 16.27 | 13.57 | 10.4 | KM Plot |
| THCA | rs16919942 | chr11:93840415 | C/T | 0.000123 | 490 | 15.32 | 17.07 | 13.83 | KM Plot |
| THCA | rs16942981 | chr18:24517248 | C/T | 4.01E-9 | 490 | 17.28 | 17.23 | 15.67 | KM Plot |
| THCA | rs16942983 | chr18:24517447 | T/G | 4.2E-9 | 487 | 15.7 | 17.13 | 17.28 | KM Plot |
| THCA | rs16943576 | chr15:90316249 | C/G | 0 | 490 | 5.8 | 17.3 | 15.63 | KM Plot |
| THCA | rs16944518 | chr15:91035084 | A/C | 0.000223 | 490 | 15.68 | 15.87 | 19.02 | KM Plot |
| THCA | rs169472 | chr1:91798341 | G/A | 7.76E-6 | 490 | 17.77 | 16.97 | 15.65 | KM Plot |
| THCA | rs16970587 | chr16:20740517 | C/T | 1.61E-5 | 490 | 16.37 | 14.67 | 17.47 | KM Plot |
| THCA | rs16970701 | chr16:20862595 | C/T | 4.8E-5 | 490 | 16.37 | 14.67 | 17.47 | KM Plot |